BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BA0AB016F11LP1|AL427050
(874 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig353 1236 0.0
>3x_Contig353
Length = 1611
Score = 1236 bits (623), Expect = 0.0
Identities = 659/667 (98%), Gaps = 3/667 (0%)
Strand = Plus / Plus
Query: 203 attcgttataaaatgggaaacaccataaataatagtgaaatttatattcaagtttagttc 262
||||||||||||||||||||||||||||||||||||||| || |||| ||||||||||||
Sbjct: 1 attcgttataaaatgggaaacaccataaataatagtgaa-ttaatatacaagtttagttc 59
Query: 263 ttacccaaacacttcaagatatcagaccagacggtctttggaggttgggaagcg-tcgac 321
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 60 ttacccaaacacttcaagatatcagaccagacggtctttggaggttgggaagcgctcgac 119
Query: 322 accagcccagataccagttttcttgtagaaatcgacaattggttcggtttgcttgtggta 381
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 120 accagcccagataccagtattcttgtagaaatcgacaattggttcggtttgcttgtggta 179
Query: 382 agaagtcaatctcttcttcaatgcttcgacgttgtcatcagatctttggaccaaatcttc 441
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 180 agaagtcaatctcttcttcaatgcttcgacgttgtcatcagaactttggaccaaatcttc 239
Query: 442 accggtgatatcgtccttcatttcagtctttggagggttgaagaccttgtggtaagatct 501
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 240 accggtgatatcgtccttcatttcagtctttggagggttgaagaccttgtggtaagatct 299
Query: 502 accagaagctggatgaaccaatctaccagtaattctgctaaccaacaattcatcatcgat 561
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 300 accagaagctggatgaaccaatctaccagtaattctgctaaccaacaattcatcatcgat 359
Query: 562 cttcaattcaacggctttttccaatggtctaccttgttgagccaacatttcatccaattt 621
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 360 cttcaattcaacggctttttccaatggtctaccttgttgagccaacatttcatccaattt 419
Query: 622 ctcagcttgtgggatggttcttgggaacccgtccaagatgaaacccttcttacagtcttg 681
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 420 ctcagcttgtgggatggttcttgggaacccgtccaagatgaaacccttcttacagtcttg 479
Query: 682 gttgttagtcaactcatccttaatcatgttaatcatgatttcgtcagagaccaacttacc 741
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 480 gttgttagtcaactcatccttaatcatgttaatcatgatttcgtcagagaccaacttacc 539
Query: 742 atcgtccataatcttcttggcttcaatacccaatggagtttgcttggcgacttgagatct 801
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 540 atcgtccataatcttcttggcttcaatacccaatggagtttgcttggcgacttgagatct 599
Query: 802 taacatgtcaccggtagc-caaatgacaagcacagaatctttcggtcaagttaggagcct 860
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 600 taacatgtcaccggtagcgaaaatgacaagcacagaatctttcggtcaagttaggagcct 659
Query: 861 gggtacc 867
|||||||
Sbjct: 660 gggtacc 666
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.38 0.711 1.31
Gapped
Lambda K H
1.38 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7479
Number of Sequences: 1807
Number of extensions: 7479
Number of successful extensions: 75
Number of sequences better than 1.0e-20: 1
length of query: 874
length of database: 10,358,551
effective HSP length: 16
effective length of query: 858
effective length of database: 10,329,639
effective search space: 8862830262
effective search space used: 8862830262
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.8 bits)
S1: 12 (24.3 bits)
S2: 50 (99.7 bits)